Serveur d'exploration sur Pittsburgh

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Prediction of transplant-free survival in idiopathic pulmonary fibrosis patients using joint models for event times and mixed multivariate longitudinal data

Identifieur interne : 001A20 ( Main/Exploration ); précédent : 001A19; suivant : 001A21

Prediction of transplant-free survival in idiopathic pulmonary fibrosis patients using joint models for event times and mixed multivariate longitudinal data

Auteurs : Jiin Choi [Corée du Sud] ; Stewart J. Anderson [États-Unis] ; Thomas J. Richards [États-Unis] ; Wesley K. Thompson [États-Unis]

Source :

RBID : PMC:4157686

Abstract

SUMMARY

We implement a joint model for mixed multivariate longitudinal measurements, applied to the prediction of time until lung transplant or death in idiopathic pulmonary fibrosis. Specifically, we formulate a unified Bayesian joint model for the mixed longitudinal responses and time-to-event outcomes. For the longitudinal model of continuous and binary responses, we investigate multivariate generalized linear mixed models using shared random effects. Longitudinal and time-to-event data are assumed to be independent conditional on available covariates and shared parameters. A Markov chain Monte Carlo (MCMC) algorithm, implemented in OpenBUGS, is used for parameter estimation. To illustrate practical considerations in choosing a final model, we fit 37 different candidate models using all possible combinations of random effects and employ a Deviance Information Criterion (DIC) to select a best fitting model. We demonstrate the prediction of future event probabilities within a fixed time interval for patients utilizing baseline data, post-baseline longitudinal responses, and the time-to-event outcome. The performance of our joint model is also evaluated in simulation studies.


Url:
DOI: 10.1080/02664763.2014.909784
PubMed: 25214700
PubMed Central: 4157686


Affiliations:


Links toward previous steps (curation, corpus...)


Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Prediction of transplant-free survival in idiopathic pulmonary fibrosis patients using joint models for event times and mixed multivariate longitudinal data</title>
<author>
<name sortKey="Choi, Jiin" sort="Choi, Jiin" uniqKey="Choi J" first="Jiin" last="Choi">Jiin Choi</name>
<affiliation wicri:level="3">
<nlm:aff id="A1">Biostatistics Collaboration Unit, Yonsei University College of Medicine, Seoul, Korea</nlm:aff>
<country xml:lang="fr">Corée du Sud</country>
<wicri:regionArea>Biostatistics Collaboration Unit, Yonsei University College of Medicine, Seoul</wicri:regionArea>
<placeName>
<settlement type="city">Séoul</settlement>
<region type="capital">Région capitale de Séoul</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Anderson, Stewart J" sort="Anderson, Stewart J" uniqKey="Anderson S" first="Stewart J." last="Anderson">Stewart J. Anderson</name>
<affiliation wicri:level="2">
<nlm:aff id="A2">Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvania</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Pennsylvanie</region>
</placeName>
<wicri:cityArea>Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh</wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Richards, Thomas J" sort="Richards, Thomas J" uniqKey="Richards T" first="Thomas J." last="Richards">Thomas J. Richards</name>
<affiliation wicri:level="2">
<nlm:aff id="A3">The Dorothy P. & Richard P. Simmons Center for Interstitial Lung Disease, Division of Pulmonary, Allergy, & Critical Care Medicine, Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Pennsylvanie</region>
</placeName>
<wicri:cityArea>The Dorothy P. & Richard P. Simmons Center for Interstitial Lung Disease, Division of Pulmonary, Allergy, & Critical Care Medicine, Department of Medicine, University of Pittsburgh, Pittsburgh</wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Thompson, Wesley K" sort="Thompson, Wesley K" uniqKey="Thompson W" first="Wesley K." last="Thompson">Wesley K. Thompson</name>
<affiliation wicri:level="2">
<nlm:aff id="A4">Department of Psychiatry, University of California San Diego, San Diego, California</nlm:aff>
<country>États-Unis</country>
<placeName>
<region type="state">Californie</region>
</placeName>
<wicri:cityArea>Department of Psychiatry, University of California San Diego, San Diego</wicri:cityArea>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PMC</idno>
<idno type="pmid">25214700</idno>
<idno type="pmc">4157686</idno>
<idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4157686</idno>
<idno type="RBID">PMC:4157686</idno>
<idno type="doi">10.1080/02664763.2014.909784</idno>
<date when="2014">2014</date>
<idno type="wicri:Area/Pmc/Corpus">001A11</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">001A11</idno>
<idno type="wicri:Area/Pmc/Curation">001986</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">001986</idno>
<idno type="wicri:Area/Pmc/Checkpoint">000937</idno>
<idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">000937</idno>
<idno type="wicri:source">PubMed</idno>
<idno type="wicri:Area/PubMed/Corpus">004207</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">004207</idno>
<idno type="wicri:Area/PubMed/Curation">004169</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">004169</idno>
<idno type="wicri:Area/PubMed/Checkpoint">004169</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">004169</idno>
<idno type="wicri:Area/Ncbi/Merge">003506</idno>
<idno type="wicri:Area/Ncbi/Curation">003506</idno>
<idno type="wicri:Area/Ncbi/Checkpoint">003506</idno>
<idno type="wicri:doubleKey">0266-4763:2014:Choi J:prediction:of:transplant</idno>
<idno type="wicri:Area/Main/Merge">001A85</idno>
<idno type="wicri:Area/Main/Curation">001A20</idno>
<idno type="wicri:Area/Main/Exploration">001A20</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en" level="a" type="main">Prediction of transplant-free survival in idiopathic pulmonary fibrosis patients using joint models for event times and mixed multivariate longitudinal data</title>
<author>
<name sortKey="Choi, Jiin" sort="Choi, Jiin" uniqKey="Choi J" first="Jiin" last="Choi">Jiin Choi</name>
<affiliation wicri:level="3">
<nlm:aff id="A1">Biostatistics Collaboration Unit, Yonsei University College of Medicine, Seoul, Korea</nlm:aff>
<country xml:lang="fr">Corée du Sud</country>
<wicri:regionArea>Biostatistics Collaboration Unit, Yonsei University College of Medicine, Seoul</wicri:regionArea>
<placeName>
<settlement type="city">Séoul</settlement>
<region type="capital">Région capitale de Séoul</region>
</placeName>
</affiliation>
</author>
<author>
<name sortKey="Anderson, Stewart J" sort="Anderson, Stewart J" uniqKey="Anderson S" first="Stewart J." last="Anderson">Stewart J. Anderson</name>
<affiliation wicri:level="2">
<nlm:aff id="A2">Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh, Pennsylvania</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Pennsylvanie</region>
</placeName>
<wicri:cityArea>Department of Biostatistics, Graduate School of Public Health, University of Pittsburgh, Pittsburgh</wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Richards, Thomas J" sort="Richards, Thomas J" uniqKey="Richards T" first="Thomas J." last="Richards">Thomas J. Richards</name>
<affiliation wicri:level="2">
<nlm:aff id="A3">The Dorothy P. & Richard P. Simmons Center for Interstitial Lung Disease, Division of Pulmonary, Allergy, & Critical Care Medicine, Department of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<placeName>
<region type="state">Pennsylvanie</region>
</placeName>
<wicri:cityArea>The Dorothy P. & Richard P. Simmons Center for Interstitial Lung Disease, Division of Pulmonary, Allergy, & Critical Care Medicine, Department of Medicine, University of Pittsburgh, Pittsburgh</wicri:cityArea>
</affiliation>
</author>
<author>
<name sortKey="Thompson, Wesley K" sort="Thompson, Wesley K" uniqKey="Thompson W" first="Wesley K." last="Thompson">Wesley K. Thompson</name>
<affiliation wicri:level="2">
<nlm:aff id="A4">Department of Psychiatry, University of California San Diego, San Diego, California</nlm:aff>
<country>États-Unis</country>
<placeName>
<region type="state">Californie</region>
</placeName>
<wicri:cityArea>Department of Psychiatry, University of California San Diego, San Diego</wicri:cityArea>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Journal of applied statistics</title>
<idno type="ISSN">0266-4763</idno>
<imprint>
<date when="2014">2014</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<title>SUMMARY</title>
<p id="P2">We implement a joint model for mixed multivariate longitudinal measurements, applied to the prediction of time until lung transplant or death in idiopathic pulmonary fibrosis. Specifically, we formulate a unified Bayesian joint model for the mixed longitudinal responses and time-to-event outcomes. For the longitudinal model of continuous and binary responses, we investigate multivariate generalized linear mixed models using shared random effects. Longitudinal and time-to-event data are assumed to be independent conditional on available covariates and shared parameters. A Markov chain Monte Carlo (MCMC) algorithm, implemented in OpenBUGS, is used for parameter estimation. To illustrate practical considerations in choosing a final model, we fit 37 different candidate models using all possible combinations of random effects and employ a Deviance Information Criterion (DIC) to select a best fitting model. We demonstrate the prediction of future event probabilities within a fixed time interval for patients utilizing baseline data, post-baseline longitudinal responses, and the time-to-event outcome. The performance of our joint model is also evaluated in simulation studies.</p>
</div>
</front>
</TEI>
<affiliations>
<list>
<country>
<li>Corée du Sud</li>
<li>États-Unis</li>
</country>
<region>
<li>Californie</li>
<li>Pennsylvanie</li>
<li>Région capitale de Séoul</li>
</region>
<settlement>
<li>Séoul</li>
</settlement>
</list>
<tree>
<country name="Corée du Sud">
<region name="Région capitale de Séoul">
<name sortKey="Choi, Jiin" sort="Choi, Jiin" uniqKey="Choi J" first="Jiin" last="Choi">Jiin Choi</name>
</region>
</country>
<country name="États-Unis">
<region name="Pennsylvanie">
<name sortKey="Anderson, Stewart J" sort="Anderson, Stewart J" uniqKey="Anderson S" first="Stewart J." last="Anderson">Stewart J. Anderson</name>
</region>
<name sortKey="Richards, Thomas J" sort="Richards, Thomas J" uniqKey="Richards T" first="Thomas J." last="Richards">Thomas J. Richards</name>
<name sortKey="Thompson, Wesley K" sort="Thompson, Wesley K" uniqKey="Thompson W" first="Wesley K." last="Thompson">Wesley K. Thompson</name>
</country>
</tree>
</affiliations>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Wicri/Amérique/explor/PittsburghV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 001A20 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 001A20 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Wicri/Amérique
   |area=    PittsburghV1
   |flux=    Main
   |étape=   Exploration
   |type=    RBID
   |clé=     PMC:4157686
   |texte=   Prediction of transplant-free survival in idiopathic pulmonary fibrosis patients using joint models for event times and mixed multivariate longitudinal data
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i   -Sk "pubmed:25214700" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd   \
       | NlmPubMed2Wicri -a PittsburghV1 

Wicri

This area was generated with Dilib version V0.6.38.
Data generation: Fri Jun 18 17:37:45 2021. Site generation: Fri Jun 18 18:15:47 2021